omics-skills plugin
Skills for omics pipelines, literature discovery, and data visualization.
How to install the omics-skills plugin
Run both commands inside Claude Code. The first adds the marketplace once; the second installs the plugin.
/plugin marketplace add fmschulz/omics-skills
/plugin install omics-skills@omics-skillsWhat's inside omics-skills
13 parts read from the plugin's own files.
Agents 1
Call as @agent-omics-skills:name- @agent-omics-skills:literature-expert
No description in the file.
Skills 12
Claude loads it when the task matches- beautiful-data-viz
Enforces standardized design principles for creating publication-ready, colorblind-safe, and minimalist charts across various plotting libraries.
- bio-annotation
Annotate proteins with functional, domain, and taxonomic information using sequence homology and HMM searches.
- bio-interdomain-hgt
Detect and polarize horizontal gene transfer between different domains of life using reciprocal hits, genomic context, and gene trees.
- bio-logic
Evaluates scientific claims, study designs, and project results using structured frameworks and a hypothesis register to assess evidence strength.
- bio-viromics
Detect, quality-check, and classify viral contigs using specialized bioinformatics tools and literature-derived reference sets.
- bioinformatics-project
Structures reproducible bioinformatics projects using canonical layouts, pinned environments, and restartable driver scripts.
- crossref-lookup
Validate DOIs, match titles to DOIs, and audit bibliographies using the Crossref REST API and OpenAlex citation counts.
- notebooks
Author, run, and convert reproducible marimo and Jupyter notebooks with embedded figures and validated environments.
- omics-pipeline
Executes multi-stage bioinformatics workflows including reads QC, assembly, binning, gene calling, and phylogenomics for genomic and viral analysis.
- polars-dovmed
Perform reproducible full-text searches of PMC Open Access and bioRxiv corpora using hosted APIs or local parquet files.
- public-db-lookup
Fetch compact JSON records from various life-science REST APIs including UniProt, NCBI, and AlphaFold DB.
- tracking-taxonomy-updates
Routes genomic sequences to domain-specific classifiers and tracks taxonomic release updates across NCBI, GTDB, and ICTV.
Using omics-skills in Claude Code
Ask for an agent by name:
@agent-omics-skills:literature-expertSkills need no command. Claude reads them when your request matches what they describe.
Update, turn off or remove
- Update the plugin (shell)
- claude plugin update omics-skills@omics-skills
- Refresh the marketplace
- /plugin marketplace update omics-skills
- Turn it off for now
- /plugin disable omics-skills@omics-skills
- Remove it
- /plugin uninstall omics-skills@omics-skills
Skills in omics-skills
- beautiful-data-vizfmschulz/omics-skills
Enforces standardized design principles for creating publication-ready, colorblind-safe, and minimalist charts across various plotting libraries.
10 files11stars - bio-annotationfmschulz/omics-skills
Annotate proteins with functional, domain, and taxonomic information using sequence homology and HMM searches.
5 files11stars - bio-interdomain-hgtfmschulz/omics-skills
Detect and polarize horizontal gene transfer between different domains of life using reciprocal hits, genomic context, and gene trees.
7 files11stars - bio-viromicsfmschulz/omics-skills
Detect, quality-check, and classify viral contigs using specialized bioinformatics tools and literature-derived reference sets.
7 files11stars - bioinformatics-projectfmschulz/omics-skills
Structures reproducible bioinformatics projects using canonical layouts, pinned environments, and restartable driver scripts.
13 files11stars - crossref-lookupfmschulz/omics-skills
Validate DOIs, match titles to DOIs, and audit bibliographies using the Crossref REST API and OpenAlex citation counts.
8 files11stars - notebooksfmschulz/omics-skills
Author, run, and convert reproducible marimo and Jupyter notebooks with embedded figures and validated environments.
13 files11stars - omics-pipelinefmschulz/omics-skills
Executes multi-stage bioinformatics workflows including reads QC, assembly, binning, gene calling, and phylogenomics for genomic and viral analysis.
16 files11stars - polars-dovmedfmschulz/omics-skills
Perform reproducible full-text searches of PMC Open Access and bioRxiv corpora using hosted APIs or local parquet files.
5 files11stars - public-db-lookupfmschulz/omics-skills
Fetch compact JSON records from various life-science REST APIs including UniProt, NCBI, and AlphaFold DB.
4 files11stars - tracking-taxonomy-updatesfmschulz/omics-skills
Routes genomic sequences to domain-specific classifiers and tracks taxonomic release updates across NCBI, GTDB, and ICTV.
10 files11stars - bio-logicfmschulz/omics-skills
Evaluates scientific claims, study designs, and project results using structured frameworks and a hypothesis register to assess evidence strength.
11stars
omics-skills plugin questions
How do I install the omics-skills plugin?
In Claude Code run /plugin marketplace add fmschulz/omics-skills, then /plugin install omics-skills@omics-skills.
What does the omics-skills plugin include?
omics-skills bundles 1 agent, 12 skills.
Which agents come with omics-skills?
literature-expert. Call one with @agent-omics-skills:literature-expert.
How do I update or remove the omics-skills plugin?
Update it with claude plugin update omics-skills@omics-skills in your shell, or from the Installed tab of /plugin. Remove it with /plugin uninstall omics-skills@omics-skills.