medsci-data plugin
Study design and validity review, literature-grounded variable operationalization, sample-size planning, data cleaning, de-identification, codebook generation, and dataset versioning.
How to install the medsci-data plugin
Run both commands inside Claude Code. The first adds the marketplace once; the second installs the plugin.
/plugin marketplace add Aperivue/medsci-skills
/plugin install medsci-data@medsci-skillsWhat's inside medsci-data
8 parts read from the plugin's own files.
Skills 8
Claude loads it when the task matches- calc-sample-size
Calculates required sample sizes for clinical studies and returns reproducible R/Python code alongside IRB-ready justification text.
- clean-data
Profiles, flags, and generates cleaning code for clinical CSV/Excel datasets through a three-stage human-in-the-loop workflow.
- define-variables
Maps research variables to canonical guidelines and database columns using a citation-backed, multi-tier verification process.
- deidentify
A local Python script that detects and removes PHI from clinical datasets using regex and heuristics across 12 country locale packs.
- design-ai-benchmarking
Plans rigorous studies to benchmark AI systems against human experts using decoupled rubrics, calibration probes, and inter-rater reliability targets.
- design-study
Reviews radiology and medical AI study designs for validity, leakage risks, cohort logic, and adherence to reporting guidelines.
- generate-codebook
Generates structured data dictionaries in JSON and Markdown formats by profiling tabular datasets and flagging uninterpretable coded values.
- version-dataset
Creates deterministic content-hash manifests to lock dataset versions, verify data integrity, and detect drift between analysis runs.
Using medsci-data in Claude Code
Skills need no command. Claude reads them when your request matches what they describe.
Update, turn off or remove
- Update the plugin (shell)
- claude plugin update medsci-data@medsci-skills
- Refresh the marketplace
- /plugin marketplace update medsci-skills
- Turn it off for now
- /plugin disable medsci-data@medsci-skills
- Remove it
- /plugin uninstall medsci-data@medsci-skills
Skills in medsci-data
- calc-sample-sizeAperivue/medsci-skills
Calculates required sample sizes for clinical studies and returns reproducible R/Python code alongside IRB-ready justification text.
10 files378stars - clean-dataAperivue/medsci-skills
Profiles, flags, and generates cleaning code for clinical CSV/Excel datasets through a three-stage human-in-the-loop workflow.
7 files378stars - define-variablesAperivue/medsci-skills
Maps research variables to canonical guidelines and database columns using a citation-backed, multi-tier verification process.
3 files378stars - deidentifyAperivue/medsci-skills
A local Python script that detects and removes PHI from clinical datasets using regex and heuristics across 12 country locale packs.
19 files378stars - design-ai-benchmarkingAperivue/medsci-skills
Plans rigorous studies to benchmark AI systems against human experts using decoupled rubrics, calibration probes, and inter-rater reliability targets.
5 files378stars - design-studyAperivue/medsci-skills
Reviews radiology and medical AI study designs for validity, leakage risks, cohort logic, and adherence to reporting guidelines.
18 files378stars - generate-codebookAperivue/medsci-skills
Generates structured data dictionaries in JSON and Markdown formats by profiling tabular datasets and flagging uninterpretable coded values.
4 files378stars - version-datasetAperivue/medsci-skills
Creates deterministic content-hash manifests to lock dataset versions, verify data integrity, and detect drift between analysis runs.
4 files378stars
medsci-data plugin questions
How do I install the medsci-data plugin?
In Claude Code run /plugin marketplace add Aperivue/medsci-skills, then /plugin install medsci-data@medsci-skills.
What does the medsci-data plugin include?
medsci-data bundles 8 skills.
How do I update or remove the medsci-data plugin?
Update it with claude plugin update medsci-data@medsci-skills in your shell, or from the Installed tab of /plugin. Remove it with /plugin uninstall medsci-data@medsci-skills.