alterlab-databases plugin
Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (38 skills)
How to install the alterlab-databases plugin
Run both commands inside Claude Code. The first adds the marketplace once; the second installs the plugin.
/plugin marketplace add AlterLab-IEU/AlterLab-Academic-Skills
/plugin install alterlab-databases@alterlab-academic-skillsWhat's inside alterlab-databases
38 parts read from the plugin's own files.
Skills 38
Claude loads it when the task matches- alterlab-alphafold-db
Retrieve AI-predicted protein structures by UniProt accession and analyze confidence metrics like pLDDT and PAE.
- alterlab-arxiv
Search and retrieve scientific preprints from arXiv via the Atom API using keywords, authors, IDs, or categories and download their PDFs.
- alterlab-bindingdb
Query measured protein-ligand binding affinities using a REST API or TSV downloads to support drug discovery and SAR analysis.
- alterlab-biorxiv
Search life sciences preprints and retrieve metadata or download full-text PDFs via the bioRxiv API.
- alterlab-brenda
Retrieves enzyme kinetic parameters, reaction equations, and environmental optima from the BRENDA database using web scraping or a SOAP API.
- alterlab-cbioportal
Query the cBioPortal REST API to access cancer genomics data including mutations, copy number alterations, and clinical outcomes across multiple studies.
- alterlab-chembl
Query the ChEMBL database via Python to retrieve bioactive molecules, target information, and bioactivity measurements like IC50 and Ki.
- alterlab-clinicaltrials
Query the ClinicalTrials.gov database to search for clinical studies by condition, drug, location, or status and retrieve detailed trial information.
- alterlab-clinpgx
Access pharmacogenomics data to query gene-drug interactions, CPIC/DPWG dosing guidelines, and clinical pharmacogene records.
- alterlab-clinvar
Query NCBI ClinVar via E-utilities API or FTP to retrieve clinical significance, pathogenicity classifications, and review status for human germline variants.
- alterlab-cosmic
Access somatic mutation data, mutational signatures, and cancer gene census information for cancer research and precision oncology.
- alterlab-datacommons
No description in the file.
- alterlab-depmap
No description in the file.
- alterlab-drugbank
No description in the file.
- alterlab-ena
No description in the file.
- alterlab-ensembl
No description in the file.
- alterlab-fda
No description in the file.
- alterlab-gene-db
No description in the file.
- alterlab-geo
No description in the file.
- alterlab-gnomad
No description in the file.
- alterlab-gtex
No description in the file.
- alterlab-gwas
No description in the file.
- alterlab-hmdb
No description in the file.
- alterlab-imaging-data-commons
No description in the file.
- alterlab-interpro
No description in the file.
- alterlab-jaspar
No description in the file.
- alterlab-kegg
No description in the file.
- alterlab-metabolomics-wb
No description in the file.
- alterlab-monarch
No description in the file.
- alterlab-opentargets
No description in the file.
- alterlab-pdb
No description in the file.
- alterlab-pubchem
No description in the file.
- alterlab-pubmed
No description in the file.
- alterlab-reactome
No description in the file.
- alterlab-string-db
No description in the file.
- alterlab-uniprot
No description in the file.
- alterlab-uspto
No description in the file.
- alterlab-zinc-db
No description in the file.
Using alterlab-databases in Claude Code
Skills need no command. Claude reads them when your request matches what they describe.
Update, turn off or remove
- Update the plugin (shell)
- claude plugin update alterlab-databases@alterlab-academic-skills
- Refresh the marketplace
- /plugin marketplace update alterlab-academic-skills
- Turn it off for now
- /plugin disable alterlab-databases@alterlab-academic-skills
- Remove it
- /plugin uninstall alterlab-databases@alterlab-academic-skills
Skills in alterlab-databases
- alterlab-alphafold-dbAlterLab-IEU/AlterLab-Academic-Skills
Retrieve AI-predicted protein structures by UniProt accession and analyze confidence metrics like pLDDT and PAE.
5 files86stars - alterlab-arxivAlterLab-IEU/AlterLab-Academic-Skills
Search and retrieve scientific preprints from arXiv via the Atom API using keywords, authors, IDs, or categories and download their PDFs.
4 files86stars - alterlab-bindingdbAlterLab-IEU/AlterLab-Academic-Skills
Query measured protein-ligand binding affinities using a REST API or TSV downloads to support drug discovery and SAR analysis.
4 files86stars - alterlab-biorxivAlterLab-IEU/AlterLab-Academic-Skills
Search life sciences preprints and retrieve metadata or download full-text PDFs via the bioRxiv API.
4 files86stars - alterlab-brendaAlterLab-IEU/AlterLab-Academic-Skills
Retrieves enzyme kinetic parameters, reaction equations, and environmental optima from the BRENDA database using web scraping or a SOAP API.
12 files86stars - alterlab-cbioportalAlterLab-IEU/AlterLab-Academic-Skills
Query the cBioPortal REST API to access cancer genomics data including mutations, copy number alterations, and clinical outcomes across multiple studies.
4 files86stars - alterlab-chemblAlterLab-IEU/AlterLab-Academic-Skills
Query the ChEMBL database via Python to retrieve bioactive molecules, target information, and bioactivity measurements like IC50 and Ki.
4 files86stars - alterlab-clinicaltrialsAlterLab-IEU/AlterLab-Academic-Skills
Query the ClinicalTrials.gov database to search for clinical studies by condition, drug, location, or status and retrieve detailed trial information.
4 files86stars - alterlab-clinpgxAlterLab-IEU/AlterLab-Academic-Skills
Access pharmacogenomics data to query gene-drug interactions, CPIC/DPWG dosing guidelines, and clinical pharmacogene records.
7 files86stars - alterlab-clinvarAlterLab-IEU/AlterLab-Academic-Skills
Query NCBI ClinVar via E-utilities API or FTP to retrieve clinical significance, pathogenicity classifications, and review status for human germline variants.
6 files86stars - alterlab-cosmicAlterLab-IEU/AlterLab-Academic-Skills
Access somatic mutation data, mutational signatures, and cancer gene census information for cancer research and precision oncology.
5 files86stars
alterlab-databases plugin questions
How do I install the alterlab-databases plugin?
In Claude Code run /plugin marketplace add AlterLab-IEU/AlterLab-Academic-Skills, then /plugin install alterlab-databases@alterlab-academic-skills.
What does the alterlab-databases plugin include?
alterlab-databases bundles 38 skills.
How do I update or remove the alterlab-databases plugin?
Update it with claude plugin update alterlab-databases@alterlab-academic-skills in your shell, or from the Installed tab of /plugin. Remove it with /plugin uninstall alterlab-databases@alterlab-academic-skills.