coding-workflow Skill

Script paths: ${CLAUDE_PLUGIN_ROOT} below is this plugin's root folder, two levels above this skill's own folder. Claude Code fills it in. If you see it unfilled, still starting with a dollar sign (as in Codex, Copilot CLI or Kimi Code), put that folder's absolute path in its place before you run a command.

coding-workflow

Document coding orchestration for Stage 2. Manages the systematic coding process, tracks progress, and generates audit trails.

When to Use

Use this skill when:

• User is ready to start Stage 2 coding
• User asks about processing documents systematically
• User needs to track coding progress
• User wants to generate audit documentation
• User mentions "batch", "coding session", or "systematic coding"

Prerequisites

Before using this skill, verify:

1. Stage 1 is complete (10+ documents manually coded)
2. Initial data structure exists
3. Project is properly initialized

Use ${CLAUDE_PLUGIN_ROOT}/skills/_shared/scripts/read-config.js --project-path <project folder> to check readiness.

Workflow Stages

Stage 2 Phase 1: Parallel Streams

Stream A (Theoretical)

• Analyze foundational literature
• Extract theoretical patterns
• Use @scholarly-companion for Socratic dialogue

Stream B (Empirical)

• Apply @dialogical-coder to documents
• Follow 4-stage visible reasoning
• Build evidence for concepts

Stage 2 Phase 2: Synthesis

• Compare theoretical and empirical patterns
• Identify alignments and tensions
• Refine data structure

Stage 2 Phase 3: Pattern Characterization

• Identify systematic variations
• Document pattern properties
• Prepare for Stage 3 theorizing

Scripts

process-batch.js

Process a batch of documents through coding workflow.

node "${CLAUDE_PLUGIN_ROOT}/skills/coding-workflow/scripts/process-batch.js" \
  --project-path /path/to/project \
  --documents "D001,D002,D003" \
  --agent dialogical-coder \
  --phase phase2_synthesis

track-documents.js

Track which documents have been coded and their status.

node "${CLAUDE_PLUGIN_ROOT}/skills/coding-workflow/scripts/track-documents.js" \
  --project-path /path/to/project \
  --list  # List all documents and status
  --mark-coded D004  # Mark document as coded

generate-audit.js

Generate audit trail documentation.

node "${CLAUDE_PLUGIN_ROOT}/skills/coding-workflow/scripts/generate-audit.js" \
  --project-path /path/to/project \
  --output audit-trail.md

Coding Session Flow

Recommended Session Structure

1. Pre-Session (5 min)

   • Check config state: read-config.js
   • Review recent conversation log
   • Set session goals

2. Coding (45-60 min)

   • Process 5-10 documents with @dialogical-coder
   • Full 4-stage reasoning for each
   • Log interactions: append-log.js

3. Reflection (10-15 min)

   • Write analytical memo
   • Update data structure if needed
   • Note emerging questions

4. Post-Session

   • Update progress: update-progress.js
   • Queue documents for next session

Interpretive Pauses

Every 5 documents, the system prompts:

"You've coded 5 documents. Before continuing, reflect:

• What patterns are emerging?
• Any surprises or tensions?
• Does the data structure still fit?"

This is enforced by the interpretive-pause.js hook.

Templates

conversation-log-spec.md

Specification for the JSONL log format used for AI-to-AI transparency.

Entry structure:

{
  "timestamp": "ISO-8601",
  "agent": "dialogical-coder",
  "action": "coding",
  "document_id": "D003",
  "concept_id": "AD1_T1_C1",
  "content": "Applied code with reasoning...",
  "metadata": {}
}

Document Status Tracking

Status	Meaning
pending	Not yet coded
in_progress	Currently being coded
coded	First pass complete
reviewed	Human has reviewed AI coding
finalized	Coding complete, quotes extracted

Integration Points

• @dialogical-coder - Primary coding agent
• interpretive-pause hook - Enforces reflection breaks
• _shared scripts - State management
• gioia-methodology skill - Data structure validation

Related

• Commands: Various coding commands trigger this skill
• Agents: @dialogical-coder for visible reasoning
• Hooks: interpretive-pause.js, check-stage1-complete.js
• Other Skills: project-dashboard for progress visualization