Serveur MCP GraphMemory-IDE

GraphMemory-IDE

An AI-assisted, long-term memory system for IDEs, powered by LadybugDB — an embedded, columnar, MIT-licensed graph database. GraphMemory-IDE is an MCP (Model Context Protocol) server that provides semantic vector search, graph-based knowledge storage, and real-time analytics. It integrates with VSCode, Cursor, and Windsurf through dedicated IDE plugins.

Graph database: the backend runs on LadybugDB 0.21.2, the actively developed successor to KuzuDB (whose open-source development halted after its acquisition by Apple). The full migration record — verified API differences, phase-by-phase execution, and the operational migration guide — lives in MIGRATION_PLAN_LADYBUG.md and docs/migration/KUZU_TO_LADYBUG.md.

Features

• Graph-based memory storage — LadybugDB embedded graph database (Cypher / openCypher dialect) with automatic primary-key hash indexes and zone-map pruning on all columns
• Semantic vector search — sentence-transformers embeddings with array_cosine_similarity Top-K queries over node embedding columns
• Codon-accelerated graph algorithms — Optional native compilation via Codon for 10-100x speedups on centrality, community detection, path analysis, and similarity computations, with automatic Python/NetworkX fallback
• FastAPI backend — Async API with JWT authentication (EdDSA/Ed25519), optional read-only mode, rate limiting, and security middleware
• Real-time analytics — WebSocket and SSE streaming for live telemetry dashboards
• Streamlit dashboard — Interactive visualization of graph metrics, user activity, and system health
• Multi-IDE plugin support — Extensions for VSCode, Cursor, and Windsurf
• Full observability — Prometheus metrics, Grafana dashboards, health checks, and alert correlation
• Production-ready Docker deployment — Multi-service Docker Compose with Nginx, PostgreSQL, Redis, and monitoring stack

Quick Start

Docker (recommended)

git clone https://github.com/elementalcollision/GraphMemory-IDE.git
cd GraphMemory-IDE/docker
docker compose up -d

Services will be available at:

• MCP Server: http://localhost:8080/docs

Local Development

# 1. Install dependencies (Python 3.11+)
python -m venv .venv && source .venv/bin/activate
pip install -r requirements.txt

# 2. Initialise the graph database schema (REQUIRED before first start —
#    the app opens the database but does not create the schema itself)
LADYBUG_DB_PATH=./data/ladybug.lbdb python server/init_db.py

# 3. Start the FastAPI server
uvicorn server.main:app --host 0.0.0.0 --port 8080 --reload

# 4. (optional) Start the Streamlit dashboard (separate terminal)
cd dashboard && streamlit run streamlit_app.py

Configuration

Variable	Default	Description
DB_LADYBUG_DB_PATH	./data/ladybug.lbdb	Path to the LadybugDB graph database file (a single .lbdb file; the parent directory must exist — the app creates it)
DB_LADYBUG_READ_ONLY	false	Open the graph database read-only (writes rejected at the DB layer; schema init skipped)
JWT_SECRET_KEY	(auto-generated)	Secret key for JWT token signing; set explicitly in production
DB_DATABASE_URL	postgresql://user:password@localhost:5432/graphmemory_dev	PostgreSQL connection string (relational + telemetry storage)
DB_REDIS_URL	redis://localhost:6379/0	Redis connection for caching (falls back to in-memory cache when unreachable)
CODON_ENABLED	true	Enable Codon acceleration
CODON_LIB_PATH	./codon/lib/	Path to compiled Codon libraries
CODON_MIN_GRAPH_SIZE	100	Minimum graph size for Codon routing

Note on env prefixes: database-related settings are read by pydantic with the DB_ prefix — e.g. the setting LADYBUG_DB_PATH is set via the DB_LADYBUG_DB_PATH environment variable. The plain LADYBUG_DB_PATH form is honoured by server/init_db.py (and KUZU_DB_PATH remains as a deprecated fallback there, for one release cycle).

Architecture

GraphMemory-IDE uses a hybrid architecture where I/O-bound code (FastAPI, database clients, WebSocket) runs in CPython, while compute-heavy graph algorithms can optionally run as native-compiled Codon modules.

IDE Plugins (VSCode/Cursor/Windsurf)
        |
        v
  FastAPI Server (CPython)
   ├── JWT Auth (EdDSA) + Security Middleware (TrustedHost / rate limit)
   ├── MCP Protocol Handler
   ├── Telemetry Ingestion + Query (/telemetry/*)
   ├── Top-K Vector Search (/tools/topk)
   ├── Analytics Engine (/api/v1/analytics/*)
   └── Dashboard Routes + SSE (/dashboard/*)
        |
   ┌────┴─────────┐
   v              v
LadybugDB      PostgreSQL + Redis
(embedded      (relational store,
 graph DB,      sessions, cache)
 sync engine)
   |
   v
Codon Bridge (optional)
 ├── Graph Kernels (.so/.dylib)
 └── Python/NetworkX fallback

Graph database layer (server/graph_database.py): an embedded LadybugDB instance opened in-process — no separate DB server. It provides a thread-safe connection pool (Condition-variable based), LadybugDB's native AsyncConnection for async handlers (GraphDatabaseManager.get_async_connection()), schema management (User / Project / Memory node tables and OWNS / COLLABORATES / CONTAINS / RELATES_TO / ACCESSED_BY relationship tables), a query engine with parameterised Cypher execution and Prometheus instrumentation, and health checks (CALL show_tables() schema-integrity validation). A read_only mode opens the database for read-only workloads (e.g. analytics replicas).

See Architecture Overview for detailed system design.

Codon Acceleration

The codon/ directory contains graph algorithm implementations compiled to native machine code via Codon. The bridge layer (codon/bridge/) automatically routes computations based on graph size and library availability:

• Graph kernels: betweenness/closeness/degree centrality, PageRank, label propagation, Louvain community detection, BFS/Dijkstra shortest paths
• Data processing: cosine similarity, batch vector operations, consistent hashing
• Fallback: If Codon libraries aren't compiled, all operations fall back to NetworkX/numpy transparently

Compile Codon modules with:

./scripts/build_codon.sh

API Overview

Endpoint	Method	Description
/health	GET	System health (CPU/memory/disk checks)
/api/v1/status	GET	Application status incl. database.ladybug_path and read_only
/auth/token	POST	JWT access token (OAuth2 password flow)
/telemetry/ingest	POST	Ingest an IDE telemetry event (validated EventType enum, ISO-8601 timestamp, JSON-serialised data)
/telemetry/list	GET	List telemetry events (paginated)
/telemetry/query	GET	Query events by event_type / user_id / session_id filters
/tools/topk	POST	Top-K semantic search: sentence-transformers embedding + array_cosine_similarity over the requested node table
/api/v1/analytics/*	GET	Analytics engine (centrality, community, clustering, streaming, GPU status)
/dashboard/*	GET	Dashboard API + SSE real-time streams (/dashboard/stream/analytics)
/metrics	GET	Prometheus metrics

Full reference: API Guide. Interactive docs at http://localhost:8080/docs (disabled in production).

Project Structure

GraphMemory-IDE/
├── server/                # FastAPI backend
│   ├── main.py            # Application entry point
│   ├── core/              # Configuration and settings
│   ├── auth/              # SSO, MFA, onboarding
│   ├── auth_jwt.py        # JWT authentication
│   ├── analytics/         # Analytics engine
│   ├── collaboration/     # Real-time collaboration
│   ├── dashboard/         # Dashboard API routes
│   ├── monitoring/        # Health checks, metrics, alerting
│   ├── security/          # Security middleware
│   ├── streaming/         # WebSocket/SSE streaming
│   ├── backup/            # LadybugDB/PostgreSQL/Redis backup orchestration
│   ├── graph_database.py  # LadybugDB integration (pool, schema, query engine, health)
│   └── init_db.py         # Graph schema initialisation (run before first start)
├── dashboard/             # Streamlit UI
├── frontend/              # TypeScript/React frontend
├── codon/                 # Codon acceleration layer
│   ├── bridge/            # Python-Codon interop with fallback
│   ├── graph_kernels/     # Native graph algorithms (.codon)
│   └── data_processing/   # Native data operations (.codon)
├── docker/                # Docker Compose configs
│   ├── docker-compose.yml # Development environment
│   ├── docker-compose.test.yml # Test services (PostgreSQL + Redis, ephemeral)
│   └── production/        # Production multi-service setup
├── tests/                 # Test suites
│   ├── integration/       # Integration tests
│   ├── production/        # Production validation
│   ├── load_testing/      # Locust load tests
│   └── smoke/             # Smoke tests
├── docs/                  # Documentation (incl. docs/migration/)
├── ide-plugins/           # VSCode, Cursor, Windsurf extensions
├── monitoring/            # Prometheus & Grafana configs
├── scripts/               # Build, deployment, and test-DB scripts
└── kubernetes/            # Kubernetes manifests

Testing

# Run all tests
PYTHONPATH=. pytest tests/ -v

# Run with coverage
PYTHONPATH=. pytest tests/ --cov=server --cov-report=html

# Run specific test categories
PYTHONPATH=. pytest tests/ -m unit
PYTHONPATH=. pytest tests/ -m integration
PYTHONPATH=. pytest tests/ -m "not slow"

Registered test markers: asyncio, unit, integration, slow, real_time, real_services, performance, mock_data, load, external, database, authentication (--strict-markers is enforced).

Integration tests against real services

Database integration tests expect PostgreSQL and Redis backing services. The ephemeral test profile brings them up (Docker / OrbStack), matching the fixture defaults:

docker compose -f docker/docker-compose.test.yml up -d
python scripts/init_test_db.py          # create the app schema in the test DB
PYTHONPATH=. pytest tests/integration/test_database_integration.py -v
docker compose -f docker/docker-compose.test.yml down -v

Without the services, PG-dependent fixtures skip cleanly; LadybugDB-backed tests run in-process against a temporary database and need no external services.

Coverage target: 85% minimum.

Production Deployment

For production, use the multi-service Docker Compose configuration:

cd docker/production
cp env.production.template .env  # Configure environment variables
docker compose -f docker-compose.prod.yml up -d

This starts 7+ services: Nginx (reverse proxy), FastAPI, Streamlit, Analytics, PostgreSQL, Redis, Prometheus, and Grafana — with isolated network subnets and resource limits. A LadybugDB api-server sidecar (ghcr.io/ladybugdb/api-server) is available for external/admin graph access; pin a version tag in production.

See the Docker Deployment Guide for complete production setup instructions.

Migration: Kuzu → LadybugDB

This codebase was migrated from Kuzu 0.10.0 to LadybugDB 0.21.2 (2026-10). Key facts for anyone extending the integration:

• Python API: import ladybug as lb; Connection(db) + init_connection(); snake_case result iteration (has_next() / get_next(), rows are lists)
• Indexes: PK-only hash indexes (automatic); secondary-property and FULLTEXT indexes are not supported in 0.21.2 — zone maps serve filter workloads instead
• Vector search: array_cosine_similarity (Kuzu's list_cosine_similarity does not exist)
• Storage: a single .lbdb file; the parent directory must exist (unlike Kuzu, LadybugDB does not create it)
• CLI: lbug (brew install ladybug); EXPORT DATABASE / IMPORT DATABASE supported for data migration

Full verified difference catalogue: MIGRATION_PLAN_LADYBUG.md §3. Operational runbook for deployed instances: docs/migration/KUZU_TO_LADYBUG.md.

Documentation

Directory	Description
MIGRATION_PLAN_LADYBUG.md	Kuzu → LadybugDB migration: phases, verified API differences, defect ledger
docs/migration/	Operational migration guide + phase verification scripts
docs/project/	Project overview, PRD, contributing guidelines, security policy
docs/architecture/	System architecture, code paths, network flows
docs/api/	API reference and client examples
docs/deployment/	Docker, Kubernetes, and production deployment guides
docs/development/	Developer setup, code quality, testing procedures
docs/operations/	System operations and performance tuning
docs/monitoring/	Prometheus, Grafana, and alerting configuration
docs/analytics/	Analytics system and ML components
docs/ide-plugins/	Plugin development for VSCode, Cursor, Windsurf
docs/user-guides/	Tutorials and end-user documentation

Contributing

See Contributing Guidelines for development workflow, commit conventions, and code review process.

License

This project is licensed under the MIT License. See LICENSE for details.