Plugin adaptyv

Apa yang ada di dalam adaptyv

24 bagian dibaca dari file asli plugin tersebut.

Skill dalam adaptyv

1. 
   alphafoldadaptyvbio/protein-design-skills

   Validate protein designs and predict complex structures using AlphaFold2 structure prediction and confidence metrics.

   2 file
   173bintang
2. 
   bindcraftadaptyvbio/protein-design-skills

   Design protein binders using hallucination with built-in AF2 validation and joint backbone and sequence optimization.

   3 file
   173bintang
3. 
   binder-designadaptyvbio/protein-design-skills

   Provides guidance for selecting and planning protein binder design campaigns using tools like BoltzGen, BindCraft, and RFdiffusion.

   2 file
   173bintang
4. 
   boltzgenadaptyvbio/protein-design-skills

   Performs all-atom protein design using a diffusion model for side-chain aware structures and ligand binding.

   2 file
   173bintang
5. 
   chaiadaptyvbio/protein-design-skills

   Predict molecular structures including protein-protein complexes, protein-ligand complexes, and protein-DNA/RNA interactions.

   2 file
   173bintang
6. 
   protein-design-workflowadaptyvbio/protein-design-skills

   Provides end-to-end guidance for protein design workflows including target preparation, backbone generation, sequence design, and structure validation.

   3 file
   173bintang
7. 
   protein-qcadaptyvbio/protein-design-skills

   Provides quality control metrics, filtering thresholds, and composite scoring strategies for evaluating protein design quality.

   5 file
   173bintang
8. 
   proteinmpnnadaptyvbio/protein-design-skills

   Design protein sequences using inverse folding to optimize for stability, expression, or specific backbone structures.

   2 file
   173bintang
9. 
   rfdiffusionadaptyvbio/protein-design-skills

   Generate protein backbones for binder design, de novo structure generation, motif scaffolding, and symmetric oligomers using a diffusion-based model.

   4 file
   173bintang
10. 
    binding-characterizationadaptyvbio/protein-design-skills

    Provides guidance for planning, troubleshooting, and interpreting binding kinetics experiments using Surface Plasmon Resonance and Biolayer Interferometry.

    173bintang
11. 
    boltzadaptyvbio/protein-design-skills

    Predict biomolecular structures including protein complexes, protein-ligand complexes, and designed binders using open-source models.

    173bintang
12. 
    campaign-manageradaptyvbio/protein-design-skills

    Orchestrates protein binder design campaigns by planning pipelines, estimating costs, and assessing design health and pass rates.

    173bintang
13. 
    cell-free-expressionadaptyvbio/protein-design-skills

    Provides guidance for optimizing cell-free protein synthesis (CFPS) experiments, troubleshooting yields, and designing DNA templates.

    173bintang
14. 
    esmadaptyvbio/protein-design-skills

    Use ESM protein language models to generate embeddings, score sequences, predict complex structures, and design protein binders.

    173bintang
15. 
    foldseekadaptyvbio/protein-design-skills

    Perform structural homology searches and clustering using 3D protein structures against PDB and AlphaFold databases.

    173bintang
16. 
    germinaladaptyvbio/protein-design-skills

    Design epitope-targeted de novo antibodies and nanobodies by hallucinating CDRs on fixed frameworks.

    173bintang
17. 
    ipsaeadaptyvbio/protein-design-skills

    Ranks protein-protein interaction designs by calculating the interprotein Score from Aligned Errors for AlphaFold and Boltz1 predictions.

    173bintang
18. 
    ligandmpnnadaptyvbio/protein-design-skills

    Designs protein sequences around small molecules, metal ions, cofactors, or nucleic acids to optimize binding pockets and active sites.

    173bintang
19. 
    mosaicadaptyvbio/protein-design-skills

    Optimizes protein binders using a JAX framework that composes multiple structure and sequence models into a single differentiable loss objective.

    173bintang
20. 
    pdbadaptyvbio/protein-design-skills

    Fetch, search, and analyze protein structures from the RCSB PDB database using Python or API requests.

    173bintang
21. 
    protenixadaptyvbio/protein-design-skills

    Predict complex molecular structures using an open-source reproduction of AlphaFold3.

    173bintang
22. 
    setupadaptyvbio/protein-design-skills

    Configures the environment and authentication for protein design tools including biomodals and BoltzGen.

    173bintang
23. 
    solublempnnadaptyvbio/protein-design-skills

    Optimizes protein sequence design to improve solubility, reduce aggregation, and enhance expression yields in E. coli.

    173bintang
24. 
    uniprotadaptyvbio/protein-design-skills

    Retrieve protein sequences, functional annotations, domain boundaries, and PDB cross-references via the UniProt REST API.

    173bintang